PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1722_p2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 304aa    MW: 33825.4 Da    PI: 7.7604
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1722_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.22.2e-1185128855
                 HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  Er RR+++++ f++L  llP++     +K +K++i+ +Av  IksL+
  RrC1722_p2  85 TERERRKKMRDMFSKLHALLPQL----PPKADKSTIVDEAVSSIKSLE 128
                 6*********************6....39*****************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.33877127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-1478138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-1481139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.82E-1382132No hitNo description
SMARTSM003536.5E-885133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-885128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MSIQFNMTNA QELGQEGFVW GISSSDDSGG GCRRIEKQLP LPQPSVLLEN PILMDKKSAK  60
GKKRTKRNGK NHAEDSPDHE IHIWTERERR KKMRDMFSKL HALLPQLPPK ADKSTIVDEA  120
VSSIKSLEQT LQKLQMKKLE KLQYSSASNT TASPTTLLTP ILNHSQILPV GAAPADCYSR  180
EAFLADQISS SITNLPYPCN DPTAAFDIWS SRNVVLNICG NEAFFNICCP KDKSGVFTNV  240
CYLFEKYNIE VVFANVSSNV YRSTYVIQAQ VSPTYENQLL GDGFGVGDIF KQAANELALY  300
FSST
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4886238e-87AF488623.1 Arabidopsis thaliana clone bHLH095 putative bHLH transcription factor mRNA, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013646406.10.0PREDICTED: transcription factor bHLH95-like
SwissprotQ9FXA31e-155BH095_ARATH; Transcription factor bHLH95
TrEMBLA0A0D3CPI20.0A0A0D3CPI2_BRAOL; Uncharacterized protein
STRINGBra018796.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50742549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.11e-114bHLH family protein